To clear that prompt, I ran the script below, removed Company Portal App, and removed the device from InTune. In your case, you'd re-enroll into Intune and see if it's better from a clean slate.

Forgot where I found the script below, but thank you to that person.

#!/bin/bash
#macOS WPJ and jamfAAD item clean up
#By Bryce Carlson - 3/2/2021
#
#This script will remove the Workplace Join items made by Company Portal durring a device registration. It will also clear the jamfAAD items from the gatherAADInfo command run after a sucessful WPJ
#Clearing this data will allow for a re-registration devices side.
#
#NOTE: THIS SCRIPT WILL NOT CLEAR AZURE AD RECORDS (those are created by Company Portal). IT MAY CLEAR MEM RECORDS IF A JAMFAAD GATHER AAD INFO COMMAND RUNS AFTER THIS AS THE AAD ID IS NOW MISSING. THIS WILL RESULT IN A DEACTIVATION OF THE DEVICE RECORD SENT FROM JAMF PRO TO AAD (AND AAD TO MEM).
#
#variable to run as current user
currentuser=`stat -f "%Su" /dev/console`
#
#variable for current logged in user AAD ID cert. and WPJ key
AAD_ID=$(su "$currentuser" -c "security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS" | awk '/\\"alis\\"<blob>=\\"/ {print $NF}' | sed 's/ \\"alis\\"<blob>=\\"//;s/.$//'")
#CERT_BY_SHA=$(su "$currentuser" -c "security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS" | grep "SHA-1" | awk '{print $3}'")
#
echo "Removing keychain password items for jamfAAD"
#jamfAAD items
su "$currentuser" -c "security delete-generic-password -l 'com.jamf.management.jamfAAD'"
rm -rf /Users/"$currentuser"/Library/Saved\\ Application\\ State/com.jamfsoftware.selfservice.mac.savedState
rm -r /Users/"$currentuser"/Library/Cookes/com.jamf.management.jamfAAD.binarycookies
rm -rf /Users/"$currentuser"/Library/Saved\\ Application\\ State/com.jamf.management.jamfAAD.savedState
su "$currentuser" -c "/Library/Application\\ Support/JAMF/Jamf.app/Contents/MacOS/JamfAAD.app/Contents/MacOS/JamfAAD clean"
#
echo "Removing keychain password items for Company Portal app (v2.6 and higher with new com.microsoft.CompanyPortalMac bundle ID)"
#Company Portal app items
rm -r /Users/"$currentuser"/Library/Cookies/com.microsoft.CompanyPortalMac.binarycookies
rm -rf /Users/"$currentuser"/Library/Saved\\ Application\\ State/com.microsoft.CompanyPortalMac.savedState
rm -r /Users/"$currentuser"/Library/Preferences/com.microsoft.CompanyPortalMac.plist
rm -r /Library/Preferences/com.microsoft.CompanyPortalMac.plist
rm -rf /Users/"$currentuser"/Library/Application\\ Support/com.microsoft.CompanyPortalMac
rm -rf /Users/"$currentuser"/Library/Application\\ Support/com.microsoft.CompanyPortalMac.usercontext.info
su "$currentuser" -c "security delete-generic-password -l 'com.microsoft.CompanyPortal'"
su "$currentuser" -c "security delete-generic-password -l 'com.microsoft.CompanyPortalMac'"
su "$currentuser" -c "security delete-generic-password -l 'com.microsoft.CompanyPortal.HockeySDK'"
su "$currentuser" -c "security delete-generic-password -l 'com.microsoft.adalcache'"
su "$currentuser" -c "security delete-generic-password -l 'enterpriseregistration.windows.net'"
su "$currentuser" -c "security delete-generic-password -l 'https://device.login.microsoftonline.com'"
su "$currentuser" -c "security delete-generic-password -l 'https://device.login.microsoftonline.com/' "
su "$currentuser" -c "security delete-generic-password -l 'https://enterpriseregistration.windows.net' "
su "$currentuser" -c "security delete-generic-password -l 'https://enterpriseregistration.windows.net/' "
su "$currentuser" -c "security delete-generic-password -a 'com.microsoft.workplacejoin.thumbprint' "
su "$currentuser" -c "security delete-generic-password -a 'com.microsoft.workplacejoin.registeredUserPrincipalName' "
#
echo "Removing WPJ for Device AAD ID $AAD_ID for $currentuser"
su "$currentuser" -c "security delete-identity -c $AAD_ID"
#echo "Removing WPJ for Device AAD ID $AAD_ID for $currentuser from SHA hash $CERT_BY_HASH"
#
echo "Please REBOOT this macOS device to re-load the login.keychain and re-run the Azure Registration via Self Service AFTER you ensure device removal from AAD and MEM server side."
exit 0

Hello @robertoa 

I just want to clarify below that Jamf AAD prompt is something which can come and thats normal, please read below information and feel free to reach me if you need any additional resources as well.

Once the initial registration is completed jamfAAD continues to run in the background and has to authenticate every 24 hours to Azure to confirm the Azure AD record is still intact and confirm the AAD Device ID. Why? Well, because it has to report it to JPRO as proof of the integrity of the registration, and the activity of the device.

This is why we have the WPJ key and cached credentials. jamfAAD actually authenticates silently to Azure and uses the items in the keychain to do so. As long as the WPJ key is ok, the Azure AD record is intact, the device is online (to contact Azure), the cached password is valid…. all is well. jamfAAD silently authenticates, gets the Device ID, reports it to JPRO, JPRO sends inventory data to Intune… everyone happy. (Quick note: JPRO only sends an inventory update to MEM when something changed..)

However, whenever this silent authentications fails, for whatever reason, jamfAAD will go into interactive mode and prompt the end user to authenticate again! This is 100% normal and expected behaviour. Furthermore, there are other situations where Azure may even instruct jamfAAD to go in interactive mode, such as an expired MFA lifetime.

- Sam

You might consider filing feedback or opening a ticket with Microsoft.  In my testing, I have found that the entire enrollment process is cumbersome and badly worded, and I'd like better visibility and control into the timing and need for these re-enrollment prompts.

MSFT ticket was submitted the other day. They are still gathering initial info like device ID and type of enrollment.

@Samstar777 that means JamfAAD is required for Jamf pro (on prem)? In my situation I able to complete the registration via company portal and then JamfAAD popup and asking for Azure Athentication though my device is showing on register complete (on endpoint) and on portal device is showing registered with azure AD. This is the error I am getting after put my Azur authentication

And then showed registration failed

In this situation what I am missing, please help me. Another thing is looks like I couldn't push conditional policy from Intune on Azure register device. Any help is appriciated

As of Jamf 10.43+ the JamfAAD app no longer exists and was replaced by "Jamf Conditional Access", which still accepts the "clean" argument and still get's the job done.

In the above script from @mvu just replace the line

su "$currentuser" -c "/Library/Application\\ Support/JAMF/Jamf.app/Contents/MacOS/JamfAAD.app/Contents/MacOS/JamfAAD clean"

with

su "$currentuser" -c "/Library/Application\\ Support/JAMF/Jamf.app/Contents/MacOS/Jamf\\ Conditional\\ Access.app/Contents/MacOS/Jamf\\ Conditional\\ Access clean"

And watch out for the "Cookes" typo in 

rm -r /Users/"$currentuser"/Library/Cookes/com.jamf.management.jamfAAD.binarycookies

su "$currentuser" -c "/Library/Application\\ Support/JAMF/Jamf.app/Contents/MacOS/JamfAAD.app/Contents/MacOS/JamfAAD clean"

su "$currentuser" -c "/Library/Application\\ Support/JAMF/Jamf.app/Contents/MacOS/Jamf\\ Conditional\\ Access.app/Contents/MacOS/Jamf\\ Conditional\\ Access clean"

rm -r /Users/"$currentuser"/Library/Cookes/com.jamf.management.jamfAAD.binarycookies

@sakul is this part work?

AAD_ID=$(su "$currentuser" -c "security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS" | awk '/\\"alis\\"<blob>=\\"/ {print $NF}' | sed 's/ \\"alis\\"<blob>=\\"//;s/.$//'")

For me it just stuck here forever. I am on macOS Ventura

Yes it does, but since you mentioned it... get rid of the space here in the sed command:

...s/ \\"alis...

 Also try running just the first part as the user that did the initial registration

security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS"

 You should get something like this in the output

...
attributes:
    "alis"<blob>="#######-####-####-####-##########"
...

If this line is missing then you don't have a registered AAD_ID.

...s/ \\"alis...

security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS"

...
attributes:
    "alis"<blob>="#######-####-####-####-##########"
...

Thanks @sakul, I get 

attributes:
    "alis"<blob>="#######-####-####-####-##########"

when Ran only 

security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS"

Which mean device register with AAD_ID but couldn't grab those. But If I run following

 currentuser=`stat -f "%Su" /dev/console`

AAD_ID=$(su "$currentuser" -c "security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS")

echo $AAD_ID

that was running forever. Any suggestion

attributes:
    "alis"<blob>="#######-####-####-####-##########"

security find-certificate -a -Z | grep -B 9 "MS-ORGANIZATION-ACCESS"

This script is meant to run as the Jamf management user. The "su" command then impersonated the currently logged in user ($currentuser).

If you execute it in terminal then you're basically trying to impersonate yourself, which is why you're getting stuck.

Thanks for that clarification. I got that Alias when I set EA for AAD_ID and ran from Jamf. One more question for this line: 

rm -r /Users/"$currentuser"/Library/Cookes/com.jamf.management.jamfAAD.binarycookies

I couldn't see that folder named Cookes/ cookies here: /Users/$currentuser/Lubrary

Anny suggestion on this?

And another question is what these two lines are doing if you can explain please

su "$currentuser" -c "security delete-generic-password -l 'com.jamf.management.jamfAAD'"

And

su "$currentuser" -c "/Library/Application Support/JAMF/Jamf.app/Contents/MacOS/Jamf Conditional Access.app/Contents/MacOS/Jamf Conditional Access clean"

rm -r /Users/"$currentuser"/Library/Cookes/com.jamf.management.jamfAAD.binarycookies

That folder should be "Cookies". It's just a typo in the original script.

su "$currentuser" -c means "run following command as $currentuser"

"security delete-generic-password -l 'com.jamf.management.jamfAAD'" means remove password from keychain with the label 'com.jamf.management.jamfAAD'

"Jamf Conditional Access" is an tool to manage Conditional Access

Jamf Conditional Access collects device and user Azure Active Directory ID values and reports them to the Jamf Pro server.
Usage:
  Jamf Conditional Access [-verbose] <command>
Available Commands:
  clean               Removes the Azure AD token from the user's keychain and the user's preferences from the preferences directory
  gatherAADInfo       Collect AAD information and send it to Jamf Pro server; use -disable-cache-read to always connect to Azure
  help                Print this help message
  registerWithIntune  Launches Microsoft Company Portal. If user successfully registers with Intune, gatherAADInfo runs.
  version             Print the version of Jamf Conditional Access

HI Guys, someone an idea, why the jamf conditional access app doesnt start with the authentication after running the device registration with the company portal app. The step with the company portal app runs fine. the second step for the conditional access app doesnt work.

Explanation:

I test on 3 devices.

two of this devices are running with my user and the same setup

on one macbook the registration went fine (twice)

on the other macbook the registration stops after the company portal.

How can i check if the conditional access app is installed on a macbook and how to ensure, that the conditional access app starts after device registering with company portal app.

Temporary some issues are found in this process. 

Temporary solution is

sudo jamf manage (before starting the azure registration with company portal)

Hi Everyone,

Has anyone been able to solve this problem somehow? Although I asked both Jamf and Microsoft about this, I could not get a satisfactory answer or solution. Especially the Microsoft side is having a hard time understanding the problem. Is the main source of this problem Jamf Pro? Is it wrong for me to ask the Microsoft side a question? If anyone has found a solution can you please help me? I had to suspend a huge project right now. This pop-up is very annoying.

Hi @husnudagidir 

For me this problem has been resolved. To resolve that we had to make chrome default with a profile and also we make a change in MS Azure for Jamf App like gave permission to access MS Azure from Jamf.

In our environment, Chrome is already used as the default browser. However, I can say that I do not fully understand the situation in the other sentence you said. I mean the following sentence.

"we make a change in MS Azure for Jamf App like gave permission to access MS Azure from Jamf."

Can you elaborate a little more on what exactly you do here? Because of this problem, our administrators may decide to completely remove Jamf Pro from the environment. So I urgently need a permanent solution. I would be very grateful if you could help.

@husnudagidir 

You have to follow this document: https://learn.microsoft.com/en-us/mem/intune/protect/conditional-access-integrate-jamf and work with Azure AD for "Create an application in Azure Active Directory" from steps 1 through 16. Here step # 6 to Step # 11 is the part i was talking about. Here your Azure Admin needs to give permission to access Jamf API to access MS Azure AD to avoid that pop-up. I hope I able to make you understand.

Hi,

Actually, I remember doing these steps. Is the following field configured in your environment? I didn't do that. Because it has been said that this feature will be discontinued. I only did it by configuring the Device Compliance part.

Hey Sam!

Do we have any chance to troubleshoot, why some Devices nearly daily gets those prompts?
Without cleaning the registration?

We just started registering the Devices to Intune via JPRO and some Users are already annoyed :D

Thanks!