@SeanHarsh you can use repoutil --configure to re-create the preference file that Reposado uses to generate the catalogs. You can find more info here: Reposado Preferences

You may also try upgrading NetSUS to 4.1, which is the latest. You can find info on how to upgrade at the bottom of this JAMF Nation post:

NetSUS 4.1.0 Update

Looks like it was a corrupt upgrade of 4.0.0 as a re-upgrade to 4.1.0 resolved it without repoutil.

Thanks!

Ok, so the NetSUS appliance is showing El Capitan updates available, but my test machine running 10.11.1 can not see the newly activated 10.11.5 update. A look at the catalog xml file for the branch on this system does not give me any indication that there are any new updates showing in there.

Looks to be an issue with mod rewrite. You have to modify /etc/apache2/sites-enabled/000-default.conf and change:

<Directory /srv/SUS/>

    Options Indexes FollowSymLinks MultiViews

    AllowOverride None

    Require all granted

</Directory>

To:

<Directory /srv/SUS/>

    Options Indexes FollowSymLinks MultiViews

    AllowOverride **All**

    Require all granted

</Directory>

You then add an .htaccess file to: /srv/SUS/html/content/catalogs/

With contents:

RewriteEngine On 

Options FollowSymLinks

RewriteBase /

RewriteCond %{HTTP_USER_AGENT} Darwin/8

RewriteRule ^index(.*).sucatalog$ content/catalogs/index$1.sucatalog [l] 

RewriteCond %{HTTP_USER_AGENT} Darwin/9 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-leopard.merged-1$1.sucatalog [l] 

RewriteCond %{HTTP_USER_AGENT} Darwin/10 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-leopard-snowleopard.merged-1$1.sucatalog [l] 

RewriteCond %{HTTP_USER_AGENT} Darwin/11 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-lion-snowleopard-leopard.merged-1$1.sucatalog [l] 

RewriteCond %{HTTP_USER_AGENT} Darwin/12 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-mountainlion-lion-snowleopard-leopard.merged-1$1.sucatalog [l] 

RewriteCond %{HTTP_USER_AGENT} Darwin/13 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-10.9-mountainlion-lion-snowleopard-leopard.merged-1$1.sucatalog [l]

RewriteCond %{HTTP_USER_AGENT} Darwin/14 

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-10.10-10.9-mountainlion-lion-snowleopard-leopard.merged-1$1.sucatalog [l]

RewriteCond %{HTTP_USER_AGENT} Darwin/15

RewriteRule ^index(.*).sucatalog$ content/catalogs/others/index-10.11-10.10-10.9-mountainlion-lion-snowleopard-leopard.merged-1$1.sucatalog [l]

These changes seem to fix the issue.

There are rewrite rules contained in the 000-default.conf file that are the same as what is in the .htaccess file we added that do not seem to work. As these lines seem to be out of the box, there may be an error there.