Ubuntu 16 LTS for JSS ?

I am trying to do the same thing with a Test Server at the moment but im not at the installation of the JSS at the moment. I should be at this point on monday/tuesday next week.

What does your JAMFSoftwareServer.log report. Also check Tomcat catalina.out log file.

catalina is talkative

May 24, 2016 10:19:51 AM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesJdbc
SEVERE: The web application [] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
May 24, 2016 10:19:51 AM org.apache.coyote.AbstractProtocol stop
INFO: Stopping ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:19:51 AM org.apache.coyote.AbstractProtocol destroy
INFO: Destroying ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 10:19:51 AM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property.
May 24, 2016 10:19:51 AM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:19:52 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 653 ms
May 24, 2016 10:19:52 AM org.apache.catalina.core.StandardService startInternal
INFO: Starting service Catalina
May 24, 2016 10:19:52 AM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu)
May 24, 2016 10:19:52 AM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /var/lib/tomcat7/webapps/ROOT.war
May 24, 2016 10:19:55 AM org.apache.catalina.startup.TldConfig execute
INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
ClassLoaderLeakPreventor: Settings for se.jiderhamn.classloader.leak.prevention.ClassLoaderLeakPreventor (CL: 0x31abb128):
ClassLoaderLeakPreventor:   stopThreads = true
ClassLoaderLeakPreventor:   stopTimerThreads = true
ClassLoaderLeakPreventor:   executeShutdownHooks = true
ClassLoaderLeakPreventor:   threadWaitMs = 5000 ms
ClassLoaderLeakPreventor:   shutdownHookWaitMs = 10000 ms
ClassLoaderLeakPreventor: Initializing context by loading some known offenders with system classloader
Attempting to load ESAPI.properties via file I/O.
Attempting to load ESAPI.properties as resource file via file I/O.
Not found in 'org.owasp.esapi.resources' directory or file not readable: /var/lib/tomcat7/ESAPI.properties
Not found in SystemResource Directory/resourceDirectory: .esapi/ESAPI.properties
Not found in 'user.home' (/usr/share/tomcat7) directory: /usr/share/tomcat7/esapi/ESAPI.properties
Loading ESAPI.properties via file I/O failed. Exception was: java.io.FileNotFoundException
Attempting to load ESAPI.properties via the classpath.
SUCCESSFULLY LOADED ESAPI.properties via the CLASSPATH from '/ (root)' using current thread context class loader!
Attempting to load validation.properties via file I/O.
Attempting to load validation.properties as resource file via file I/O.
Not found in 'org.owasp.esapi.resources' directory or file not readable: /var/lib/tomcat7/validation.properties
Not found in SystemResource Directory/resourceDirectory: .esapi/validation.properties
Not found in 'user.home' (/usr/share/tomcat7) directory: /usr/share/tomcat7/esapi/validation.properties
Loading validation.properties via file I/O failed.
Attempting to load validation.properties via the classpath.
SUCCESSFULLY LOADED validation.properties via the CLASSPATH from '/ (root)' using current thread context class loader!
SecurityConfiguration for ESAPI.printProperties not found in ESAPI.properties. Using default: false
SecurityConfiguration for Encryptor.CipherTransformation not found in ESAPI.properties. Using default: AES/CBC/PKCS5Padding
SecurityConfiguration for ESAPI.Logger not found in ESAPI.properties. Using default: org.owasp.esapi.reference.JavaLogFactory
SecurityConfiguration for Logger.LogApplicationName not found in ESAPI.properties. Using default: true
SecurityConfiguration for Logger.LogServerIP not found in ESAPI.properties. Using default: true
May 24, 2016 10:19:59 AM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /var/lib/tomcat7/webapps/ROOT.war has finished in 7,041 ms
May 24, 2016 10:19:59 AM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:19:59 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 7107 ms
CMFileReset:JAMFCMFILE
CMSyslogReset:JAMFCMSYSLOG
May 24, 2016 10:36:46 AM org.apache.coyote.AbstractProtocol pause
INFO: Pausing ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:36:46 AM org.apache.catalina.core.StandardService stopInternal
INFO: Stopping service Catalina
Starting deallocation
Error deallocating APP_USAGE_LARGE_DATA_THRESHOLD_DEFAULT
Error deallocating UPGRADE_TO_90_DISABLE_FULL_LOOKUPS
Error deallocating appUsageLargeDataThreshold
Error deallocating DEPLOYMENT_TABLE
Error deallocating PROFILE_TABLE
Error deallocating PROFILE_TABLE_KEY
Error deallocating SELECT_FIELD_LIST_NO_SETTING
Error deallocating INSTANCE
Error deallocating DEPLOYMENT_TABLE
Error deallocating PROFILE_TABLE
Error deallocating PROFILE_TABLE_KEY
Error deallocating INSTANCE
Error deallocating SAFARI_FOR_IOS_BUNDLE_ID
Error deallocating SELECT_CLASSROOM
Error deallocating SELECT_STUDENT_IDS
Error deallocating SELECT_INSTRUCTOR_IDS
Error deallocating SELECT_MOBILE_DEVICE_GROUP_IDS
Error deallocating SELECT_INSTRUCTOR_GROUP_IDS
Error deallocating SELECT_STUDENT_GROUP_IDS
Error deallocating ADD_INSTRUCTOR_SQL
Error deallocating ADD_STUDENT_SQL
Error deallocating ADD_MOBILE_DEVICE_GROUP_SQL
Error deallocating ADD_TEACHER_USER_GROUP_SQL
Error deallocating ADD_STUDENT_USER_GROUP_SQL
Error deallocating REMOVE_ALL_INSTRUCTOR_SQL
Error deallocating REMOVE_ALL_STUDENT_SQL
Error deallocating REMOVE_ALL_MOBILE_DEVICE_GROUP_SQL
Error deallocating REMOVE_ALL_INSTRUCTOR_GROUP_SQL
Error deallocating REMOVE_ALL_STUDENT_GROUP_SQL
Error deallocating REMOVE_INSTRUCTOR_FROM_ALL_SQL
Error deallocating REMOVE_STUDENT_FROM_ALL_SQL
Error deallocating REMOVE_MOBILE_DEVICE_GROUP_SQL
Error deallocating SELECT_CLASSIDS_FOR_TEACHER
Error deallocating SELECT_CLASSIDS_FOR_STUDENT
Error deallocating SELECT_CLASSIDS_FOR_GROUP
Error deallocating SELECT_CLASSIDS_FOR_USER_GROUP
Error deallocating SELECT_ALL_STUDENT_DEVICE_FOR_CLASS_SQL
Error deallocating SELECT_ALL_TEACHER_DEVICE_FOR_CLASS_SQL
Error deallocating SELECT_ALL_SHARED_DEVICE_FOR_CLASS_SQL
Error deallocating SELECT_ALL_STUDENT_DEVICE_SQL
Error deallocating SELECT_ALL_TEACHER_DEVICE_SQL
Error deallocating SELECT_ALL_SHARED_DEVICE_SQL
Error deallocating SELECT_CLASSIDS_FOR_STUDENT_DEVICE_SQL
Error deallocating SELECT_CLASSIDS_FOR_TEACHER_DEVICE_SQL
Error deallocating SELECT_CLASSIDS_FOR_SHARED_DEVICE_SQL
Error deallocating NO_SITES_AVAILABLE
Error deallocating ITERATION_NUMBER
Error deallocating USER_SELECT_SQL
Error deallocating COMMON_USER_CRITERIA
Error deallocating IS_MIGRATED
Error deallocating COMMON_USER_CONTENT_CRITERIA
Error deallocating MAX_CRITERIA_FOR_DISPLAY
Error deallocating COMMON_COMPUTER_CRITERIA
Error deallocating MAX_CRITERIA_FOR_DISPLAY
Error deallocating COMMON_DEVICE_CRITERIA
Error deallocating haveLDAPComputerExtensionAttributes
Error deallocating NO_SITES_AVAILABLE
Error deallocating CONNECTION_TIMEOUT
Error deallocating haveLDAPMobileDeviceExtensionAttributes
Error deallocating haveLDAPUserExtensionAttributes
Error deallocating leftOuterJoinPolicies
Error deallocating policyNotificationWhere
Error deallocating beaconMonitoringIsDisabled
Error deallocating UPGRADE_TO_90_DISABLE_FULL_LOOKUPS
Error deallocating UPGRADE_TO_90_DISABLE_FULL_LOOKUPS
Error deallocating SQL_ID
Error deallocating INSERT_SQL
Error deallocating DELETE_SQL
Error deallocating SELECT_SQL
Deallocation complete
ClassLoaderLeakPreventor: JVM is shutting down - skip cleanup
May 24, 2016 10:36:48 AM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesJdbc
SEVERE: The web application [] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
May 24, 2016 10:36:48 AM org.apache.coyote.AbstractProtocol stop
INFO: Stopping ProtocolHandler ["http-bio-8443"]
May 24, 2016 10:36:49 AM org.apache.coyote.AbstractProtocol destroy
INFO: Destroying ProtocolHandler ["http-bio-8443"]
May 24, 2016 9:27:37 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:38 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:38 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:38 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:38 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:38 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
May 24, 2016 9:27:40 PM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property.
May 24, 2016 9:27:40 PM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["http-bio-8443"]
May 24, 2016 9:27:41 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 3111 ms
May 24, 2016 9:27:41 PM org.apache.catalina.core.StandardService startInternal
INFO: Starting service Catalina
May 24, 2016 9:27:41 PM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu)
May 24, 2016 9:27:41 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /var/lib/tomcat7/webapps/ROOT.war
May 24, 2016 9:28:06 PM org.apache.catalina.startup.TldConfig execute
INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
ClassLoaderLeakPreventor: Settings for se.jiderhamn.classloader.leak.prevention.ClassLoaderLeakPreventor (CL: 0x24b6f22d):
ClassLoaderLeakPreventor:   stopThreads = true
ClassLoaderLeakPreventor:   stopTimerThreads = true
ClassLoaderLeakPreventor:   executeShutdownHooks = true
ClassLoaderLeakPreventor:   threadWaitMs = 5000 ms
ClassLoaderLeakPreventor:   shutdownHookWaitMs = 10000 ms
ClassLoaderLeakPreventor: Initializing context by loading some known offenders with system classloader
May 24, 2016 9:28:08 PM org.apache.catalina.util.SessionIdGeneratorBase createSecureRandom
INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [111] milliseconds.
Attempting to load ESAPI.properties via file I/O.
Attempting to load ESAPI.properties as resource file via file I/O.
Not found in 'org.owasp.esapi.resources' directory or file not readable: /var/lib/tomcat7/ESAPI.properties
Not found in SystemResource Directory/resourceDirectory: .esapi/ESAPI.properties
Not found in 'user.home' (/usr/share/tomcat7) directory: /usr/share/tomcat7/esapi/ESAPI.properties
Loading ESAPI.properties via file I/O failed. Exception was: java.io.FileNotFoundException
Attempting to load ESAPI.properties via the classpath.
SUCCESSFULLY LOADED ESAPI.properties via the CLASSPATH from '/ (root)' using current thread context class loader!
Attempting to load validation.properties via file I/O.
Attempting to load validation.properties as resource file via file I/O.
Not found in 'org.owasp.esapi.resources' directory or file not readable: /var/lib/tomcat7/validation.properties
Not found in SystemResource Directory/resourceDirectory: .esapi/validation.properties
Not found in 'user.home' (/usr/share/tomcat7) directory: /usr/share/tomcat7/esapi/validation.properties
Loading validation.properties via file I/O failed.
Attempting to load validation.properties via the classpath.
SUCCESSFULLY LOADED validation.properties via the CLASSPATH from '/ (root)' using current thread context class loader!
SecurityConfiguration for ESAPI.printProperties not found in ESAPI.properties. Using default: false
SecurityConfiguration for Encryptor.CipherTransformation not found in ESAPI.properties. Using default: AES/CBC/PKCS5Padding
SecurityConfiguration for ESAPI.Logger not found in ESAPI.properties. Using default: org.owasp.esapi.reference.JavaLogFactory
SecurityConfiguration for Logger.LogApplicationName not found in ESAPI.properties. Using default: true
SecurityConfiguration for Logger.LogServerIP not found in ESAPI.properties. Using default: true
May 24, 2016 9:28:11 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /var/lib/tomcat7/webapps/ROOT.war has finished in 29,439 ms
May 24, 2016 9:28:11 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8443"]
May 24, 2016 9:28:11 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 29184 ms
CMFileReset:JAMFCMFILE
CMSyslogReset:JAMFCMSYSLOG

Just realised how old this post is - delete comment