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Anyone have any luck installing Biopython with a script?

Will_M
New Contributor II

Posted on ‎09-05-2017 08:30 AM

I have to install Biopython in our lab spaces, I tried installing with the following script but it has failed for me.

!/bin/sh

easy_install pip
pip install biopython

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tlarkin
Honored Contributor

Posted on ‎09-05-2017 05:13 PM

Can you run this on a Mac locally? I get this output using pip

$ pip search Biopython
A3MIO (0.0.1)                  - A3M/A2M I/O for BioPython
bcbio-gff (0.6.4)              - Read and write Generic Feature Format (GFF) with Biopython integration.
Bio_Eutils (1.65)              - Standalone version of the Biopython Eutils modules
bioext (0.19.1)                - Misc utilities and definitions not included or hidden in BioPython
biopython-extensions (0.18.6)  - Misc utilities and definitions not included or hidden in BioPython
biopython (1.70)               - Freely available tools for computational molecular biology.
bioscripts.convert (0.4)       - Biopython scripts for converting molecular sequences between formats.
gbgb (0.1.0)                   - Goodbye, GenBank is a package for use with Biopython that gives feature annotations from GenBank records a new and better life.
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